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Chip type: Axiom_MNEc670

The Axiom Genotyping Solution

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> cdf <- AffymetrixCdfFile$byChipType("Axiom_MNEc670", tags="r1")
> cdf

Path: annotationData/chipTypes/Axiom_MNEc670
Filename: Axiom_MNEc670,r1.cdf
File size: 217.55 MB (228116405 bytes)
Chip type: Axiom_MNEc670
RAM: 0.00MB
File format: v4 (binary; XDA)
Dimension: 1190x1190
Number of cells: 1416100
Number of units: 677340
Cells per unit: 2.09
Number of QC units: 4

> unitNames <- getUnitNames(cdf)
> seqToHumanReadable(grep("^AFFX-", unitNames))
[1] "1-6544"
> seqToHumanReadable(grep("^AX-", unitNames))
[1] "6545-677340"

NOTE: There are no analysis methods in aroma.affymetrix that supports this chip type. There are several reasons for this, one is that the CEL files the Axiom platform are so called multi-channel CEL, and none of the preprocessing methods are prepared for this.