Chip type: RaEx-1_0-st-v1

Rat Exon 1.0 ST Array

Affymetrix press release: First quarter of 2006.

Resources

By aroma-project.org:

As with Human Exon 1.0 ST array, we have created versions of CDFs based on Affymetrix's annotation 'level' as given in the NetAffx probesets csv file (see http://www.affymetrix.com/analysis/downloads/current_exon/). Consult the Affymetrix documentation for how these levels of annotation were designed.

NetAffx (R1) 18 Jul 2008 created by Mark Robinson (WEHI/Garvan)

• RaEx-1_0-st-v1.cdf.gz Binary version of the unsupported CDF file (shown above) from Affymetrix. 1,065,076 units each representing a probeset, no grouping.
• RaEx-1_0-st-v1,coreR1,A20080718,MR.cdf.gz Core probesets only. 8,608 units/transcript clusters, 91,995 groups/probesets.
• RaEx-1_0-st-v1,extendedR1,A20080718,MR.cdf.gz Extended
  • Core probesets: 19,970 units/transcript clusters, 226,586 groups/probesets.
• RaEx-1_0-st-v1,fullR1,A20080718,MR.cdf.gz Full+Extended+Core probesets: 203,975 units/transcript clusters.

By Affymetrix:

• Product page
• Datasheet
• Support Materials (Library files w/ CDFs, probe sequences etc.)
• Public data sets: Tissue / Mixture / Colon Cancer datasets

By dChip.org:

• dChip data files: gene & genome information files