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Chip type: MOUSEDIVm520650

Affymetrix Mouse Diversity Genotyping Array

"The Affymetrix Mouse Diversity Genotyping Array enables researchers to accurately characterize a broad range of mouse strains and their crosses and uncover genetic changes in mouse models of disease. With more than 120 times the number of SNPs of competing products, and an average of 4.3 kilobases (kb) between SNPs, the Mouse Diversity Genotyping Array has greater density and distribution than any other publicly available mouse SNP array."

MOUSEDIVm520650

> cdf <- AffymetrixCdfFile$byChipType("MOUSEDIVm520650")
> cdf

AffymetrixCdfFile:
Path: annotationData/chipTypes/MOUSEDIVm520650
Filename: MOUSEDIVm520650.CDF
Filesize: 637.40MB
Chip type: MOUSEDIVm520650
RAM: 0.00MB
File format: v4 (binary; XDA)
Dimension: 2572x2680
Number of cells: 6892960
Number of units: 2458697
Cells per unit: 2.80
Number of QC units: 4

Resources

By aroma-project.org:

  • MOUSEDIVm520650,na30,mm9,HB20100603.ufl.gz
    • Unit Fragment-Length (UFL) annotation file mapping to the units in the MOUSEDIVm520650.CDF. Mouse (Mus musculus) Genome build mm9. Sources: Affymetrix NetAffx CSV files MOUSEDIVm520650.cn.na30.annot.csv (795MB) and MOUSEDIVm520650.na30.annot.csv (358MB). Created by: Henrik Bengtsson, 2010-06-03.
  • MOUSEDIVm520650,na30,mm9,HB20100603.ugp.gz
    • Unit Genome Position (UGP) annotation file mapping to the units in the MOUSEDIVm520650.CDF. Mouse (Mus musculus) Genome build mm9. Sources: Affymetrix NetAffx CSV files MOUSEDIVm520650.cn.na30.annot.csv (795MB) and MOUSEDIVm520650.na30.annot.csv (358MB). Created by: Henrik Bengtsson, 2010-06-03.
  • MOUSEDIVm520650,HB20100530.acs.gz - Aroma Cell Sequence (ACS) annotation file mapping cell indices to 25-mer sequences and target strandedness. Sources: Two Affymetrix probe_tab files. Created by: Henrik Bengtsson, 2010-05-30.

By Affymetrix.com: