Skip to main content

Chip type: Hs_PromPR_v02

Human Promoter Tiling 1.0R Array

> cdf <- AffymetrixCdfFile$byChipType("Hs_PromPR_v02")
> print(cdf)
AffymetrixCdfFile:
Path: annotationData/chipTypes/Hs_PromPR_v02
Filename: Hs_PromPR_v02.cdf
Filesize: 61.95MB
Chip type: Hs_PromPR_v02
RAM: 0.00MB
File format: v4 (binary; XDA)
Dimension: 2166x2166
Number of cells: 4691556
Number of units: 23155
Cells per unit: 202.62
Number of QC units: 0

> acm <- AromaCellMatchScoreFile$byChipType(getChipType(cdf))
> print(acm)
AromaCellMatchScoreFile:
Name: Hs_PromPR_v02
Tags:
Pathname: annotationData/chipTypes/Hs_PromPR_v02/Hs_PromPR_v02.acm
File size: 4.47MB
RAM: 0.00MB
Number of data rows: 4691556
File format: v1
Dimensions: 4691556x1
Column classes: integer
Number of bytes per column: 1
Footer: <createdOn>20081204 16:55:16
EST</createdOn><platform>Affymetrix</platform><chipType>Hs_PromPR_v02</chipType>
Chip type: Hs_PromPR_v02
Platform: Affymetrix

> acs <- AromaCellSequenceFile$byChipType(getChipType(cdf))
> print(acs)
AromaCellSequenceFile:
Name: Hs_PromPR_v02
Tags:
Pathname: annotationData/chipTypes/Hs_PromPR_v02/Hs_PromPR_v02.acs
File size: 116.33MB
RAM: 0.00MB
Number of data rows: 4691556
File format: v1
Dimensions: 4691556x26
Column classes: raw, raw, raw, raw, raw, raw, raw, raw, raw, raw, raw,
raw, raw, raw, raw, raw, raw, raw, raw, raw, raw, raw, raw, raw, raw,
raw
Number of bytes per column: 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1
Footer: <createdOn>20081204 16:42:56
EST</createdOn><platform>Affymetrix</platform><chipType>Hs_PromPR_v02</chipType>
Chip type: Hs_PromPR_v02
Platform: Affymetrix

> cdfU <- getUniqueCdf(cdf)
> acp <- AromaCellPositionFile$byChipType(getChipType(cdfU))
> print(acp)
AromaCellPositionFile:
Name: Hs_PromPR_v02
Tags: unique
Pathname:
annotationData/chipTypes/Hs_PromPR_v02/Hs_PromPR_v02,unique.acp
File size: 20.79MB
RAM: 0.00MB
Number of data rows: 4359744
File format: v1
Dimensions: 4359744x2
Column classes: integer, integer
Number of bytes per column: 1, 4
Footer: <createdOn>20081209 10:26:40
EST</createdOn><platform>Affymetrix</platform><chipType>Hs_PromPR_v02</chipType>
Chip type: Hs_PromPR_v02
Platform: Affymetrix

> acc <- AromaCellCpgFile$byChipType(getChipType(cdfU))
> print(acc)
AromaCellCpgFile:
Name: Hs_PromPR_v02
Tags: unique
Full name: Hs_PromPR_v02,unique
Pathname:
annotationData/chipTypes/Hs_PromPR_v02/Hs_PromPR_v02,unique.acc
File size: 16.63 MB (17439158 bytes)
RAM: 0.00 MB
Number of data rows: 4359744
File format: v1
Dimensions: 4359744x1
Column classes: double
Number of bytes per column: 4
Footer: <createdOn>20081215 21:36:29
EST</createdOn><platform>Affymetrix</platform><chipType>Hs_PromPR_v02</chipType>
Chip type: Hs_PromPR_v02
Platform: Affymetrix

Resources

By aroma-project.org:

By Affymetrix:

By the authors of MAT: